Package: Ac3net 1.2.2
Ac3net: Inferring Directional Conservative Causal Core Gene Networks
Infers directional conservative causal core (gene) networks. It is an advanced version of the algorithm C3NET by providing directional network. Gokmen Altay (2018) <doi:10.1101/271031>, bioRxiv.
Authors:
Ac3net_1.2.2.tar.gz
Ac3net_1.2.2.zip(r-4.5)Ac3net_1.2.2.zip(r-4.4)Ac3net_1.2.2.zip(r-4.3)
Ac3net_1.2.2.tgz(r-4.4-any)Ac3net_1.2.2.tgz(r-4.3-any)
Ac3net_1.2.2.tar.gz(r-4.5-noble)Ac3net_1.2.2.tar.gz(r-4.4-noble)
Ac3net_1.2.2.tgz(r-4.4-emscripten)Ac3net_1.2.2.tgz(r-4.3-emscripten)
Ac3net.pdf |Ac3net.html✨
Ac3net/json (API)
| # Install 'Ac3net' in R: |
| install.packages('Ac3net', repos = c('https://altayg.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 7 years agofrom:ef9d02af14. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 17 2024 |
| R-4.5-win | OK | Sep 17 2024 |
| R-4.5-linux | OK | Sep 17 2024 |
| R-4.4-win | OK | Sep 17 2024 |
| R-4.4-mac | OK | Sep 17 2024 |
| R-4.3-win | OK | Sep 17 2024 |
| R-4.3-mac | OK | Sep 17 2024 |
Exports:Ac3netAc3net.commonlinksAc3net.cutoffAc3net.filtersamesAc3net.getDifferentLinksAc3net.getDirectedOrDualLinksAc3net.maxmimAc3net.MTCAc3net.performance
Dependencies:data.table
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Implement Ac3net algorithm with a single function. | Ac3net |
| Find the common links between the network lists. | Ac3net.commonlinks |
| Calculates a quick cutoff value from an adjacency matrix | Ac3net.cutoff |
| The correlations of the same variables are set to zero. | Ac3net.filtersames |
| Find the different links between the network lists. | Ac3net.getDifferentLinks |
| Find the unique directed or dual links in the network. | Ac3net.getDirectedOrDualLinks |
| Find the maximum valued partner of each variable. | Ac3net.maxmim |
| Return adjusted p-values of the adjancency matrix. | Ac3net.MTC |
| Find the performance of the first network based on the second. | Ac3net.performance |
| Real E.coli Gene Expression Dataset | expdata |
| The known intreactions of E.coli from RegulonDB database. | truenet |
| The indices to force to zero correlations. | zeroindx |
